Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs462862 chr5:94607364 G/A 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs463261 chr5:94608928 G/T 1.95E-8 176 2.15 18.48 14.35 KM Plot
PAAD rs463587 chr5:94609912 A/G 3.65E-9 178 2.15 19.7 14.18 KM Plot
PAAD rs463838 chr5:94606021 C/G 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs463961 chr5:94608687 G/A 1.95E-8 176 2.15 18.48 14.35 KM Plot
PAAD rs464001 chr5:94608643 C/T 1.61E-8 176 2.15 17.5 14.33 KM Plot
PAAD rs464008 chr5:94606963 A/G 1.72E-8 177 2.15 17.5 14.35 KM Plot
PAAD rs464084 chr5:94605834 T/C 1.72E-8 177 2.15 17.5 14.35 KM Plot
PAAD rs464158 chr5:94605832 G/T 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs464971 chr5:94607689 A/G 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs4652272 chr1:177796542 C/T 0.000152 178 6.75 21.03 15.42 KM Plot
PAAD rs4652902 chr1:36612955 C/A 8.54E-5 178 19.47 12.2 16.27 KM Plot
PAAD rs4655643 chr1:67090099 G/T 5.1E-12 178 2.25 15.53 15.57 KM Plot
PAAD rs465847 chr5:94606360 A/G 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs466024 chr5:94593199 C/T 5.35E-5 171 0.3 19.47 14.6 KM Plot